Protein Nanopores & Protein Sequencing

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  1. Journal of the American Chemical Society

    Direct Identification and Quantification of Peptide Biomarkers in 20% Human Serum Using a Solid-State Nanopore Platform and Machine Learning

    Yuhua Cai, Yuhan Liu, Ismahane Khaled, Benjamin Cressiot, Laurent Bacri, Juan Pelta

    Discovered via OpenAlex

  2. Zenodo (CERN European Organization for Nuclear Research)

    jaeoncho/nanopore-amino-acid-classification: v1.0.0 – Initial Research Code Release

    jaeoncho

    Discovered via OpenAlex

  3. Journal of General Virology

    Converging lines of evidence fail to detect nanovirus replication in its insect vector

    Laura Di Pietro, Mathilde Villegas, Auguste Rajot, Nina I. Lukhovitskaya, Valentin Guyot, François Hoh, Yasmine Tiberbache, Jean-Louis Zeddam, Yannis Michalakis, Mikhail M. Pooggin, Stéphane Blanc

    Discovered via OpenAlex

  4. Genes & Development

    A ubiquitin network safeguards cell identity by continuously degrading a stem cell-related translational machinery

    Salwa Danial, Raya Ghanim, Muhammad Makhzumy, Avital Oknin Vaisman, Eliya Bitman-Lotan, Fabian Glaser, Jelly HM Soffers, Jesslyn C. Henriksen, Avital Sarusi-Portuguez, Olivia S. Rissland, Ryan D. Mohan, Ayala Shiber, Amir Orian

    Discovered via OpenAlex

  5. ACS Sensors

    Vestibule Engineering of MspA Nanopores Enables Single-Molecule Detection of Protein Tag Reporters and Lysine Acetylation via Geometric Repositioning

    Jiadun Liu, Ronghui Liu, Meilin Zhu, Xinlei Sheng, Shujun He, Jiajia Guo, Yi Li

    Discovered via OpenAlex

  6. Bioconjugate Chemistry

    Digestion and Orthogonal Click Conjugation Enables Nanopore Reading of Proteins

    Jasper W. van de Sande, Xiuqi Chen, Cees Dekker, Bauke Albada

  7. bioRxiv (Cold Spring Harbor Laboratory)

    Sample preparation for direct nanopore based protein identification via tryptic peptide recognition

    Carolin Hensel, Carolin Kleber, Ida Suppanz, Atefeh Akbari, Sebastian Gutsch, Tobias Hutzenlaub, Tobias Ensslen, Jan Claas Behrends, Felix von Stetten, Gerhard Mittler, Jan-Niklas Klatt, Andreas W. Schreiber

    Discovered via OpenAlex

  8. International Journal of Molecular Sciences

    Nanopore Sequencing for Epigenetic Decoding: Applications, Analytical Constraints, and Translational Prospects

    Jiachao Xin, Jiaxuan Liu, Yichao Liu, Xinru Liu, Mengke Ma, An Huang, Zijie Ye, Pengfan Zhang, Xue Wang, Tao Zeng, Xiumei Lin, Chengwei Liu, Liang Lu, Liang Chen

    Discovered via OpenAlex

  9. bioRxiv (Cold Spring Harbor Laboratory)

    Selective Recognition, Covalent Linkage and Chemical Exchange of Artificial Cells through Engineered α-Hemolysin

    Xu Han, Ishii Yuta, Kota Naito, Ayako Ijuin, Takayoshi Watanabe, Wancheng Zhang, Ako Kagawa, Asako Narita, Takeshi Yokoyama, Toshihisa Osaki, Shoji Takeuchi, Ryuji Kawano, Yoshikazu Tanaka, Tomoaki Matsuura

    Discovered via OpenAlex

  10. Small Methods

    Label‐Free YaxAB Nanopore Fingerprinting of Cancer‐Associated Single‐Residue Bcl‐xL Variants

    Minji Chung, Sohee Oh, Jin‐Sik Kim, 황성보, Ki‐Baek Jeong, Seung‐Wook Chi

    Discovered via OpenAlex

  11. Zenodo (CERN European Organization for Nuclear Research)

    StepVisor v1.0: split–merge plateau detection for nanopore peptide current

    Shizhe Jiang

    Discovered via OpenAlex

  12. PLoS ONE

    Characterisation of multidrug-resistant, avian pathogenic-like Escherichia coli O78 from dairy-bred calves with atypical colisepticaemia

    Jolinda Pollock, Geoffrey Foster, Jordan Maliska, Katrina Henderson, Colin Mason, Cici Corbett, Gavin K. Paterson

    Discovered via OpenAlex

  13. Problems of Particularly Dangerous Infections

    Phenotypic Analysis and Genetic Characteristics of Clinical Strains of Vibrio paracholerae

    Daria L. Kusmartseva, Челдышова Надежда Борисовна, M. V. Proskuryakova, Т.В. Валова, A. V. Osin, Федоров Андрей Витальевич, Портенко Светлана Анатольевна, Заднова Светлана Петровна

    Discovered via OpenAlex

  14. ACS Nano

    Engineered MspA Nanopores for Real-Time Detection of Insulin, Its Pharmaceutical Analogues, and Degradation Products

    Sabine Straathof, Matthijs Jonathan Tadema, Lijian Zhan, Giovanni Maglia

  15. bioRxiv (Cold Spring Harbor Laboratory)

    A strategy for ionic current analysis of nanopore protein readouts

    Andrew J. Stein, Neda Ghohabi Esfahani, Stuart Akeson, Pooria Daneshvar Kakhaki, Daphne Kontogiorgos-Heintz, Jeff Nivala, Miten Jain

    Preprint source: bioRxiv: Bioinformatics

  16. Proceedings of the National Academy of Sciences

    Dynamic tRNA modification programs align codon usage with growth-phase-specific gene expression in Pseudomonas aeruginosa

    Yannick Noah Frommeyer, Jingjing Sun, Junzhou Wu, Benedikt Kennepohl, Julius Witte, Nicolas Oswaldo Gomez, Jana Battermann, Leon Becker, Pierina Cetraro, Ruth Verstraten, Jürgen Tomasch, Andreas Pich, Daniel Pearce Depledge, Peter C. Dedon, Susanne Häußler

    Discovered via OpenAlex

  17. Nature Nanotechnology

    From DNA to full-length proteins through nanopore sequencing

    Giovanni Maglia

  18. International Journal of Medical Microbiology

    The transcriptional regulator ArcR represses virulence and γ-hemolysin expression in Staphylococcus aureus USA300 LAC

    Ayesha Serwat, Samira Khodi Aghmiuni, Mujahid Hussain, Shihui Yuan, Ping Yan, Huang Yi, Jinglong Guo, Yujie Li, Ting Xue, Baolin Sun

    Discovered via OpenAlex

  19. Biological and Pharmaceutical Bulletin

    A Biotinylated Heptapeptide Containing a D-Amino Acid Suppresses Both IgE-Dependent and -Independent Allergic Edema in Mice

    Makoto Ohira, Hana Yuki, Miu Tsumuraya, Erika Nozaki, Ryoka Nukimizu, Tadahiro Etoh, Daisuke Uta, Tsukasa Matsumoto, Akira Sato

    Discovered via OpenAlex

  20. uO Research (University of Ottawa)

    Development of a Solid-State Nanopore Platform Toward High-Throughput, Ultra-Sensitive, and Robust Single-Molecule Analysis of Nucleic Acids and Proteins

    Mohamed Yassine Bouhamidi

    Discovered via OpenAlex

  21. Zenodo (CERN European Organization for Nuclear Research)

    《Nanomedicine & Biointerfaces at the Limit: Precision Delivery, Diagnostics, Sequencing, Regeneration, and Safe Human Interfaces》 is a flagship-scale research volume exploring what happens when nanoscale engineering begins to interact directly with living systems.

    33

    Discovered via OpenAlex

  22. Microchemical Journal

    A cobalamin-capturing peptide enables nanopore detection of naturally occurring vitamin B12 forms

    Ying Wang, Shanshan Wang, Lei Ma

    Discovered via OpenAlex

  23. Life Analysis

    Nanopore-based enzyme-linked immunosorbent assay for exosome detection

    Xinyao Liu, Yakun Yi, Lei Liu, Haichen Wu

    Discovered via OpenAlex

  24. Angewandte Chemie International Edition

    Noncovalent‐Interaction–Driven Single‐Molecule Exchange Enables Enantiomer Discrimination of Selected Amino Acids in a Nanopore

    Wenying Hao, Jing Zhan, Jianchuan Liu, Mingqian Zhang, Xiaobin Huang, Ke Zhou, Dongmei Xi, Lei Liu, Hai‐Chen Wu

    Discovered via OpenAlex

  25. ACS Sensors

    A Peptidoglycan-Mimetic Nanopore Receptor Resolves Glycopeptide Antibiotic Recognition and Resistance at the Single-Molecule Level

    Zhuoqun Su, Liuxin Jiao, Jingxian Hou, Yirong Wang, Jianing Chen, Wanxiao Wang, Di Wu, Yongning Wu, Guoliang Li

    Discovered via OpenAlex

  26. ACS Nano

    Leveraging Electroosmosis in OmpF for Robust Peptide Sensing

    Fan Gao, Abhishek Acharya, Lin-Lin Zhang, Pratik Kumar Behera, Mathias Winterhalter, Ulrich Kleinekathöfer, Yi‐Tao Long, Yi‐Lun Ying

    Discovered via OpenAlex

  27. Warwick Research Archive Portal (University of Warwick)

    Bicyclic peptides : targeting toxins and pathogens to accelerate anti-infective discovery

    Jonathan Whiteside

    Discovered via OpenAlex

  28. Journal of Clinical Microbiology

    Nanopore sequencing in infectious disease diagnostics and surveillance

    Adithi Somayaji, Piyas Mukherjee, Caroline Koch, Clarissa Prazeres da Costa, Youssef Hamway

    Discovered via OpenAlex

  29. bioRxiv (Cold Spring Harbor Laboratory)

    Characterization of Single Ribosomes and Virus Particles with Large-Diameter Perfringolysin O Nanopores

    Andela Vracar, Veneta Salyahetdinova, Sandor Balog, Alessandro Ianiro, Anasua Mukhopadhyay, Michael Mayer

    Discovered via OpenAlex

    Preprint source: bioRxiv: Biophysics

  30. Small Methods

    Peptide Fingerprinting of Single Protein Molecules Using In‐Plane Nanopore Sensors Integrated to an Extended Immobilized Nanoscale Enzymatic Reactor (eINER)

    Suresh Shivanka, Randy F. Espinal Cabrera, Maximillian I. Chibuike, Pramodi Vithanage, Indu A. Chandrasoma, Pubudu Premarathne, Matthew Verber, Steven A. Soper

    Discovered via OpenAlex

  31. Zenodo (CERN European Organization for Nuclear Research)

    HURDLER construct designs and sequencing results

    Wenzhao Dai

    Discovered via OpenAlex

  32. ACS Nano

    Liposome-Supplemented Cell-free Synthesis of a Peptide that Forms β-barrel Nanopores

    Shoko Fujita, Mana Sato, Ryuji Kawano

    Discovered via OpenAlex

  33. Nature Biotechnology

    An engineered nanopore identifies saccharides, amino acids, peptides and ribonucleotides

    Lang Yao, Zixuan Wang, Jialu Chen, Wen SUN, Kefan Wang, Yunqi Xiao, Hanhan Zhang, Wenzheng Li, Yifan Wang, Lulu Zhao, Xinyi Dai, Qian Lu, Panke Zhang, Shuo Huang

  34. Chemical Engineering Journal

    Coordination-driven single-molecule SERS discrimination of amino acids in a gold plasmonic nanopore

    Yanru Ding, Cai Gao, Zhong Wang, Jie Chen, Xing‐Hua Xia, Li-Na Ji, Kang Wang

    Discovered via OpenAlex

  35. uO Research (University of Ottawa)

    Investigating Heparin Dynamics through Solid-State Nanopores: Toward Nanopore-based Methods for Glycomics

    Kexin Zhao

    Discovered via OpenAlex

  36. bioRxiv (Cold Spring Harbor Laboratory)

    Counterions, Polarization and Pore Hydration Relay Drive Ion Permeation through Hydrophobic Pore Formed by the MERS Coronavirus E Protein

    Zhongyi Wan, Mei Hong, Qiang Cui

    Discovered via OpenAlex

    Preprint source: bioRxiv: Biophysics

  37. Angewandte Chemie International Edition

    Decoding Oxidation State Landscapes Within Individual Native Peptides by Nanopore

    Jun‐Ge Li, Jie Jiang, Yan Gao, Xia Zhou, Yi‐Tao Long, Meng‐Yin Li

    Discovered via OpenAlex

  38. Zenodo (CERN European Organization for Nuclear Research)

    Computational Sensing and Discrimination of Two Sequence-Similar Peptide Hormone Miniproteins Utilizing Geometrically Varied Solid-State Nanopores

    Gang Hu, Tingwang Jiang, Jing Tu

    Discovered via OpenAlex

  39. The International Journal of Neuropsychopharmacology

    537. Bridging the translational gap in psychiatry using a multimodal multi-omics collaboration: the consortium for preclinical psychiatric research

    Suresh Sundram

    Discovered via OpenAlex

  40. Journal of the Inland Fisheries Society of India

    HEMOLYSIN III SUPER FAMILY PROTEIN, A POTENTIAL VIRULENCE FACTOR IN ENTEROBACTER CLOACAE ASSOCIATED WITH MASS MORTALITY IN LABEO BATA ELICITS IMMUNE RESPONSE DURING INFECTION

    Tanuja Abdulla, Prasenjit Paria, A. K. BERA, R K Manna, Madonna T. Thachil, B. K. DAS

    Discovered via OpenAlex

  41. Frontiers in Endocrinology

    Transcriptomic analysis identifies FABP5 as a candidate regulator of lipid accumulation in metabolic dysfunction-associated fatty liver disease

    Kaishuo Lv, Shuhang Zhong, Xiaoqing Liu, Junru Zhou, Di Lu, Xiaoying Luo, Liqun Tu, Bingxi Zhou, Shuangyin Han, Bingyong Zhang, Xiuling Li, Jiayu Ye, Zhiyu Yang

    Discovered via OpenAlex

  42. bioRxiv (Cold Spring Harbor Laboratory)

    Aerolysin enables modular, non-genetic functionalization of living cell surfaces

    Andrew C.D. Lemmex, Matthew R. Pawlak, Wendy Ryan Gordon

    Discovered via OpenAlex

  43. Iconic Research and Engineering Journals

    Molecular Detection and Characterization of Some Virulence (Fnba, Hla and Cna) Genes of Staphylococcus aureus Isolated From Clinical Specimen at Madonna University Teaching Hospital (M.U.T.H), Rivers State.

    Chidinma C Nwanesindu, Mirabeau Tatfeng, Silas Goodluck

    Discovered via OpenAlex

  44. ACS Nano

    Proton-Driven Anthrax Protective Antigen Nanopore for Enantiospecific Discrimination of Chiral Amino Acids via Current Readout

    Yan Wang, Zhirui Zhang, Shilong Liu, Yunjiao Wang, Yao Li, Mingdong Dong, Liang Wang

    Discovered via OpenAlex

  45. Nano Letters

    Single-Molecule Monitoring of Formaldehyde–Lysine Residue Chemistry using an Engineered MspA Nanopore

    Xiaoyu Du, Qianqian Cao, Na Fan, Yuqin Wang

    Discovered via OpenAlex

  46. Nature Nanotechnology

    A self-assembled peptide forms α-helical nanopores for ultrasensitive biomarker profiling

    Varsha Shaji, Rajeev Jain, Neethu Puthumadathil, Kalyanashis Jana, Vedasmiritha T S, Ulrich Kleinekathöfer, Krishnananda Chattopadhyay, Kozhinjampara R. Mahendran

    Discovered via OpenAlex

  47. ChemRxiv

    IR Light Induces a Switch of Protein Translocation Direction from Electroosmotic to Electrophoretic in Quartz Nanopore Sensing

    Tithi Lai, Jayamini Hewage, Teesha Pathirage, Y. M. Nuwan D. Y. Bandara

    Discovered via OpenAlex

  48. arXiv (Cornell University)

    Reliability Limits and Decoding for Partial Nanopore Protein Rereads With Persistent State

    H. Ni, Haofan Dong, Ozgur B. Akan

    Discovered via OpenAlex

  49. VCU Scholars Compass (Virginia Commonwealth University)

    Thiol-Enhanced Nanopore Sensing of Cysteine-Containing Peptides

    Bella Bitner

    Discovered via OpenAlex

  50. bioRxiv (Cold Spring Harbor Laboratory)

    Single-Molecule Proteomics via a Dynamic Translocase and Physics-Informed Machine Learning

    Jaylen E. Taylor, Parichit Sharma, Bryan A. Krantz

    Discovered via OpenAlex

    Preprint source: bioRxiv: Biophysics

  51. Digital Commons - University of South Florida (University of South Florida)

    Language Model Adapter for de novo Trans-Membrane Beta-Barrel Protein Design

    Keagan Hitt

    Discovered via OpenAlex

  52. Zenodo (CERN European Organization for Nuclear Research)

    Dataset for: Single-Molecule Proteomics via a Dynamic Translocase and Physics-Informed Machine Learning

    Bryan A. Krantz

    Discovered via OpenAlex

  53. Zenodo (CERN European Organization for Nuclear Research)

    Detection and Molecular Characterization of Methicillin-Resistant Staphylococcus aureus (MRSA) in a Tertiary Care Hospital: A Review

    Satwinder Singh, Manita Paneri, Showkat Hussain, Dr. Praveen Kumar

    Discovered via OpenAlex

  54. Analytical Chemistry

    Pushing the Analytical Limits of Graphene Nanopores for Single-Molecule Protein Sensing: Noise Budgets, Transport Physics, and AI Decoding

    Yingying Jiang, 郑多楷, Huan Fang, Xinyi Li, Yong Hu

    Discovered via OpenAlex

  55. Small Methods

    Nanopore‐Based Multiparametric Single‐Molecule Protein Detection: From Structural Analysis to Clinical Translation

    史银岭, Ziyi Wang, Yueming Zhai

    Discovered via OpenAlex

  56. Small Methods

    Microfluidic Sample Compartmentalization for Biomolecular Concentration Quantification Using a Nanopore Sensor

    Morteza Safari, Juliana Chawich, Ali Najafi Sohi, Martin Charron, Vincent Tabard‐Cossa, Michel Godin

    Discovered via OpenAlex

  57. Nature Communications

    In vitro reconstitution of chromatin replication recapitulates symmetric histone recycling

    Fritz Nagae, Shizuko Endo, Yasuto Murayama, Tsuyoshi Terakawa

    Discovered via OpenAlex

  58. Small Methods

    Iterative Self‐Supervised Signal Curation Enables High‐Fidelity Peptide Profiling in Parallel Nanopore Sensing

    Hailin Pan, Fengqin Luo, Yishuo Zhang, Shizhe Jiang, Wenzhi Wang, Huixian Zeng, Yunfeng Zhang, Ou Wang, Wenbing Qin, Lingxuan Zhang, Dapeng Wang, Junyi Chen, Ji Wang

    Discovered via OpenAlex

  59. Nature Communications

    Exopeptidase-assisted nanopore peptide sequence identification

    Ying-Huan FU, Nannan Wei, Kai‐Li Xin, Xinyi Li, Li-Min Zhang, Cheng Yang, Feng Yan, Yi‐Tao Long, Yi‐Lun Ying

    Discovered via OpenAlex

  60. Animals

    QKI Promotes Sheep Preadipocyte Differentiation by Reducing Cavin3 mRNA Stability

    Zicheng Li, Changsong Xu, Bokang Shan, Yuan Wang, Wangyang Qin, Lei Xia, Liying Qiao, Wenzhong Liu, Yangyang Pan

    Discovered via OpenAlex

  61. bioRxiv (Cold Spring Harbor Laboratory)

    A pyramidal silicon nanopore for single misfolded Tau protein characterisation

    Hoi Lam Cheung, Dehua Hu, Jianxin Yang, Ho Pui Ho

    Discovered via OpenAlex

  62. Small Methods

    How We Simulate Nanopores

    Behzad Mehrafrooz, Xavier Mleziva, Meng Xu, Melika Shekari, Christopher Maffeo, Aleksei Aksimentiev

  63. Nature Chemical Biology

    Computational design of antimicrobial peptide nanopores

    Rahul Deb, Marcelo D. T. Torres, Ivo Kabelka, Jan Přibyl, Kateřina Dvořáková Bendová, Edo Vreeker, Markéta Koběrská, Gabriela Balikova Novotna, Miloš Petřík, Giovanni Maglia, César de la Fuente‐Núñez, Robert Vácha

  64. Molecular Cell

    PALM-Scan enables single-molecule site-specific detection of protein S-palmitoylation with a nanopore

    Zhirui Zhang, Xihao Yang, Yifan Sun, Yi Hao, Yao Li, Yunjiao Wang, Chunyang Xie, Pinghui Peng, Shilong Liu, Xinyan Jiang, Zhonghao Zhang, Eryan Kong, Liang Wang, Aimin Yang

    Discovered via OpenAlex

  65. Chemical Engineering Science

    Hydrated chain conformations regulate protein transport in flexible nanopores

    Daiwen Li, Mingjie Wei, Shi-Peng Sun, Yong Wang

    Discovered via OpenAlex

  66. Nature

    Sequential reading of a stepwise-shortened peptide immobilized on nanopore

    Jialu Chen, Hanhan Zhang, Kefan Wang, Tian Li, Wen SUN, Zixuan Wang, Xinmeng Gao, Zhenyuan Cao, Yusheng Ouyang, Lang Yao, Yifan Wang, Yunqi Xiao, Ruidong Li, Xingwang An, Xinyi Dai, Lulu Zhao, Qian Lu, Panke Zhang, Shuo Huang

    Curated by Nanopore Foundations & Signal Analysis · Protein analysis · Rereading · Sequential cleavage · Transient pore analyte looping

  67. ERA

    Transcriptomic and epigenetic analyses of environmental exposure in mouse models

    Wenduo Qi

    Discovered via OpenAlex

  68. ChemRxiv

    Pressure-Voltage Modulation of Passage Dynamics for Enhanced Nanopore Biosensing

    Mohamed Yassine Bouhamidi, Martin Charron, Vincent Tabard‐Cossa

    Discovered via OpenAlex

  69. CRC Press eBooks

    Nanopore Sensing for Single-Entity Analysis: Challenges, Enhancements, and Future with AI and Computational Methods

    Eugene Gyasi Agyemang

    Discovered via OpenAlex

  70. Zenodo (CERN European Organization for Nuclear Research)

    BALROG-RAPID

    Edward Bird

    Discovered via OpenAlex

  71. Zenodo (CERN European Organization for Nuclear Research)

    A single peptide self-assembles into flexible nanopores for ultrasensitive disease protein profiling

    Varsha Shaji, Neethu Puthumadathil, Renu Jain, Kalyanashis Jana, Vedasmiritha T S, Ulrich Kleinekathöfer, Krishnananda Chattopadhyay, Kozhinjampara R. Mahendran

    Discovered via OpenAlex

  72. bioRxiv (Cold Spring Harbor Laboratory)

    Nanopore Electrometry Resolves Peptide Charge Patterns beyond Ionic-Current Blockade

    Pranjal Sur, Prabal Kumar Maiti, Manoj M. Varma

    Discovered via OpenAlex

    Preprint source: bioRxiv: Biophysics

  73. bioRxiv (Cold Spring Harbor Laboratory)

    Beyond the Static Caliper: Dynamical Translocases and the Mathematical Imperative for Single-Molecule Proteomics

    Jaylen E. Taylor, Parichit Sharma, Bryan A. Krantz

    Discovered via OpenAlex

    Preprint source: bioRxiv: Biophysics

  74. PLANT PHYSIOLOGY

    Dissecting wheat epitranscriptome and proteome under salt stress characterizes an m6A reader gene vital for salinity adaptation

    Jie Zang, Qian Zhang, Yuyu Zhang, Zheng Wang, Yuxiu Dong, Yongming Chen, Xian Sheng Zhang, Yifeng Hou

    Discovered via OpenAlex

  75. ACS Sensors

    Chaotropic Surface Chemistry for Protein Profiling with Solid-State Micropores

    Shoji Kashiwabara, Md Sifat Islam, Makusu Tsutsui, Masateru Taniguchi

    Discovered via OpenAlex

  76. Journal of Nanobiotechnology

    Discriminating single-amino acid differences and post-translational modifications in negatively charged peptides with α-hemolysin nanopores

    Liting Kang, Linting Wang, Xuefei Fan, Lingfang Xu, Han Yang, Chenxin Wu, Tongxin Zhu, Xiangyi Zhao, Linming Zhang, Jianhuang Xue, Shuanghong Yan

    Discovered via OpenAlex

  77. Figshare

    Additional file 1 of Discriminating single-amino acid differences and post-translational modifications in negatively charged peptides with α-hemolysin nanopores

    Liting Kang, Linting Wang, Xuefei Fan, Lingfang Xu, Yang Han, Chenxin Wu, Tongxin Zhu, Xiangyi Zhao, Linming Zhang, Jianhuang Xue, Shuanghong Yan

    Discovered via OpenAlex

  78. Biology

    First Complete Mitochondrial Genomes of the Invasive Mussel Perna viridis from Brazil and the Southwestern Atlantic

    André Oliveira de Souza Lima, Rafael Schroeder, Gabriela Scholante Delabary, Gilberto Caetano Manzoni, Mayara Carneiro Beltrão

    Discovered via OpenAlex

  79. Zenodo (CERN European Organization for Nuclear Research)

    Dataset for: Beyond the Static Caliper: Dynamical Translocases and the Mathematical Imperative for Single-Molecule Proteomics

    Bryan A. Krantz

    Discovered via OpenAlex

  80. bioRxiv (Cold Spring Harbor Laboratory)

    Long-read transcriptomics highlights venom gland specialization and Inhibitor Cystine Knot (ICK) rich toxin diversity in Philippine tarantulas

    Lorenz Rhuel P. Ragasa, Maria Mikaela U. Dumbrique, Sid Alfred S. Gamboa, Anj Guillan M. Baile, Darrell C. Acuña, Heidie Frisco Cabanos, Ricardo C.H. del Rosario, Leonardo A. Guevarra, Myla R. Santiago-Bautista

    Discovered via OpenAlex

    Preprint source: bioRxiv: Bioinformatics

  81. Nucleic Acids Research

    MiaA-mediated tRNA modifications couple tryptophan attenuation and changes in tRNA abundance to complex phenotypes in Pseudomonas aeruginosa

    Yannick Noah Frommeyer, Janne Gesine Thöming, Nicolas O Gomez, Svenja Grobe, Matthias Preuße, Alejandro Arce‐Rodríguez, Kerstin Neubauer, Benedikt Kennepohl, Tim Kirk, Raimo Franke, Mark Brönstrup, Meina Neumann‐Schaal, Mathias Müsken, Daniel Pearce Depledge, Heike Bähre, Andreas Pich, Susanne Häußler

    Discovered via OpenAlex

  82. UNC Libraries

    Insights on using plastic-based dual in-plane nanopore sensors for differentiation and shape determinations of single protein molecules

    Steven A. Soper, Suresh Shivanka, Adam R. Hall, Collin McKinney, Maximillian I. Chibuike, Matthew Verber, Sunggook Park, Junseo Choi, Farhad Shiri

    Discovered via OpenAlex

  83. Repository of the University of Ljubljana (University of Ljubljana)

    Development of biological nanopores for sensing medically relevant proteins

    Marija Srnko

    Discovered via OpenAlex

  84. Journal of Virological Methods

    Performance comparison of rapid and native barcoding methods for Oxford Nanopore sequencing of Poliovirus Viral Protein 1 (VP1) amplicons

    James E. Bullows, Christina J. Castro, Caeden Meade, Katherine D. Poston, Jaume C. Jorba

    Discovered via OpenAlex

  85. Zenodo (CERN European Organization for Nuclear Research)

    Industrialisation des thérapies décentralisées : Biosécurité de l'oncologie personnalisée à ARNm (Déclaration d'antériorité / Prior Art)

    Xavier Pillet

    Discovered via OpenAlex

  86. ChemRxiv

    A physical aid to site-selective modification of a peptide: targeting of single residues for conjugation, stapling, and labeling with a nanopore and mechanical positioning

    G Sampath

    Discovered via OpenAlex

  87. Autophagy

    Vancomycin-stressed Staphylococcus aureus extracellular vesicles hijack macrophage autophagy to enhance bacterial intracellular survival

    Bing Lu, Wenjiao Chang, Xueer Liu, Shanshan Zhang, Pengsheng Ding, Zhengchao Nie, Lan Shi, Gan Liu, Wenjin Wang, Wei Y, Chenggong Guo, Yuanyuan Dai, Xiaoling Ma

    Discovered via OpenAlex

  88. Zenodo (CERN European Organization for Nuclear Research)

    A Generalized Universal Mass Balance Framework: Mathematical Foundations, Cross-Disciplinary Applications, and Cosmological Implications of Transfer, Transformation, Storage, and Sequestration : # A Generalized Universal Mass Balance Framework: Unifying Matter Transfer, Transformation, Storage, and Sequestration Across Engineering, Biological, Ecological, and Cosmological Systems with Mathematical Validation and Observational Confirmation ---

    Sudhakar Geruganti

    Discovered via OpenAlex

  89. Journal of Bacteriology

    Aeromonas veronii biotype sobria serine protease activates aerolysin and cleaves EpCAM to breach the epithelial barrier

    Hidetomo Kobayashi, Soshi Seike, Eizo Takahashi, Keinosuke Okamoto, Hiroyasu Yamanaka

    Discovered via OpenAlex

  90. Molecular Biology

    Redox-Dependent Isoforms of the Bacillus cereus Fur Protein: Identification, Structural and Functional Analysis

    Vadim Salyamov, Olga S. Kostareva, Sergey G. Mayorov, S. V Tishchenko, Azat G. Gabdulkhakov, Alexey S. Nagel, Zhanna I. Andreeva‐Kovalevskaya, Alexander V. Siunov, Alexander S. Solonin

    Discovered via OpenAlex

  91. PLoS neglected tropical diseases

    Development and international multicenter evaluation of a second-generation immunochromatography test for the serological diagnosis of melioidosis

    Hasyanee Binmaeil, Thanakon Bunsong, Koukeo Phommasone, Matthew T. Robinson, Manivanh Vongsouvath, Elizabeth A. Ashley, Enoka Corea, Trung Thanh Trinh, Shirley Yi Fen Hii, Rohaidah Hashim, Habib Abdul Hakim Esa, Tonnii Sia, Yuwana Podin, Robert Edward Norton, Sophie Cunningham, Jamal I-Ching Sam, Christina Yek, Ella M. Meumann, Bart J. Currie, Mary N. Burtnick, Paul J. Brett, Narisara Chantratita

    Discovered via OpenAlex

  92. Small

    Light‐Driven, Phase‐Locked Protein Pumping Through a Single Plasmonic Optofluidic Nanopore

    Mohammad Karbalaei Akbari, Kumar Shrestha, Yanbin Cui, Serge Zhuiykov

    Discovered via OpenAlex

  93. IEEE International Conference on Nanotechnology (IEEE-NANO)

    Mechanistic Insights into Protein Translocation Under Competing Electrophoretic and Electroosmotic Forces in Solid-State Nanopores

    Rui Liu, Tixi He, Yin Zhang

    Discovered via OpenAlex

  94. Analysis & Sensing

    Multiscale Theoretical Calculations Drive Mechanism Analysis and Application Expansion of Nanopore Detection

    Dongdong Wang, Xinjia Zhao, Li M, J Y Zhang, Yingying Lian, Guangyan Qing

    Discovered via OpenAlex

  95. Journal of the American Chemical Society

    Single-Molecule Fingerprinting of Unlabeled Full-Length Proteins Using an Aerolysin Nanopore

    Verena Rukes, Evita Norkute, Georges Barnikol, Jingze Duan, Jiajie Gao, Chan Cao

    Discovered via OpenAlex

  96. bioRxiv (Cold Spring Harbor Laboratory)

    BIRD-Seq: B2 Protein Integrated End-to-End Pipeline for dsRNA Detection and Nanopore Sequencing for Virus Monitoring

    Athanasios Nikolaos Xhurxhi, Subhankar Sahu, Hélène Scheer, Elliot F Miott, Abdelmalek Alioua, Daniel Clesse, Baptiste Monsion, Julien Pompon, Sabine Szunerits, Todd Blevins, Christophe Ritzenthaler

    Discovered via OpenAlex

  97. Angewandte Chemie

    Inside Back Cover: Large‐Diameter DNA‐Scaffolded Nanopores Enabled by Loosely Packed Peptides for Single‐Molecule Sensing (Angew. Chem. 29/2026)

    Zugui Peng, Daisuke Noshiro, Shiroh Futaki, Ryuji Kawano

    Discovered via OpenAlex

  98. Angewandte Chemie International Edition

    Inside Back Cover: Large‐Diameter DNA‐Scaffolded Nanopores Enabled by Loosely Packed Peptides for Single‐Molecule Sensing (Angew. Chem. Int. Ed. 29/2026)

    Zugui Peng, Daisuke Noshiro, Shiroh Futaki, Ryuji Kawano

    Discovered via OpenAlex

  99. bioRxiv (Cold Spring Harbor Laboratory)

    Fluorescence Blinking Patterns Fingerprint the Local Protein Environment

    Salome Püntener, Dorothea Kossmann, Krzysztof Bielec, Pablo Rivera‐Fuentes

    Discovered via OpenAlex

  100. ACS Nano

    Engineering a Biological Nanopore for Monitoring Protein Dynamics and Conformational Changes at the Single-Molecule Level

    Kumar Sarthak, Veerle Van Meervelt, Misha Soskine, Giovanni Maglia, Aleksei Aksimentiev

  101. bioRxiv (Cold Spring Harbor Laboratory)

    Female-specific m6A remodeling in the liver correlates with post-transcriptional metabolic adaptation to high fat diet

    Sofia V. Krylova, Maxwell Horton, G Bucciarelli, Li Liu, Jacob L. Berrigan, Ronald Cutler, Kartik Chandran, Nathaniel W. Snyder, Toma Tebaldi, Simone Sidoli, Kamini Singh, Jeffrey E. Pessin

    Discovered via OpenAlex

  102. Sensors and Actuators B Chemical

    Rapid lectin detection via nanoconfined polysaccharide-protein agglutination in an iontronic nanopore sensor

    Y M Xu, Songbai Cao, Yuheng Liu, Jun Peng, Mingyi Yu, Youjian Liu, Yuhua Cai, Sébastien Balme, Tianji Ma, Zhong Cao

    Discovered via OpenAlex

  103. Langmuir

    From Amino Acids to Proteins via Peptide-Centric Nanopore Technology for Sensing, Probing, and Design

    Wenzhi Ma, Ke Chen, Gengchen Hu, Yiming Zhang, Yao Jiang, Dongmei Xi

    Discovered via OpenAlex

  104. Nature Communications

    A universal deep learning framework for empowering nanopore identification by reinforcing temporal signals

    Ming Li, Minmin Li, Yuchen Cao, Jing Wang, Hanwen Ning, Guangyan Qing

    Discovered via OpenAlex

  105. The Journal of Physical Chemistry B

    Direct Observation of Electric Field-Driven Protein Translocation through the Single-Walled Carbon Nanotube Embedded in a Lipid Bilayer Membrane Revealed a High Dipole Moment of the Transition State

    Saurabh Chaubey, Km Mamata Patel, Yogita Rani, Simran Nasa, Manoj M. Varma, Prabhat Tripathi

    Discovered via OpenAlex

  106. Research Square

    High-Rate Fingerprinting of Protein Isoforms by Quasi-regulated Enzyme-free Transport Through CytK Nanopores

    Meni Wanunu, Amr K. Makhamreh, Ali Fallahi, Rik Dhar, Monika Kumari, Siddarth Krishnan, Michele Meseonznik, Luning Yu, Dinara Boyko, Keira Reich-Veillette, Yuhaohua Zheng, Elizabeth A. Libby, Aleksei Aksimentiev

    Curated by Nanopore Foundations & Signal Analysis · Fingerprinting · Motor-free transport · Preprint · Protein analysis

  107. Frontiers in Microbiology

    Editorial: A molecular and structural approach to deciphering and combating infectious pathogens

    Valeria Napolitano, Eliana De Gregorio, Felipe Romero‐Saavedra, Rita Berisio

    Discovered via OpenAlex

  108. Nature Nanotechnology

    High-resolution nanopore peptide sensing, profiling and sequence assembly

    Kefan Wang, Xingwang An, Xinmeng Gao, Yusheng Ouyang, Zixuan Wang, Pingping Fan, Li K, Yunqi Xiao, Wendong Jia, Jialu Chen, Wen SUN, Panke Zhang, Shuo Huang

  109. Advanced Materials Interfaces

    Solid‐State Nanopore Characterization of Dendrimer‐Peptide Conjugates Across Defined Peptide Loadings

    Chaoming Gu, Jin Woong Lee, Kamruzzaman Joty, Marisela Leon, Santosh Khatri, Janeesha Manawasinghe, Seungpyo Hong, Min Jun Kim

    Discovered via OpenAlex

  110. Journal of Chemical Theory and Computation

    Improving All-Atom Molecular Dynamics Models for Quantitative Prediction of Nanopore Blockade Current

    Jingqian Liu, Crystal Rodriguez, Min Chen, Aleksei Aksimentiev

    Preprint source: bioRxiv: Biophysics

    Curated by Nanopore Foundations & Signal Analysis · Preprint · Signal analysis · Signal modeling

  111. Journal of Drug Delivery Science and Technology

    Core-shell mesoporous silica nanoparticles for gene delivery: Desing principles and strategies to overcome biological barriers

    Giorgia Mano, Aránzazu Díaz‐Cuenca

    Discovered via OpenAlex

  112. Advanced Science

    Nanopore‐Based Protein Deceleration and Sensing Using Graphene/Si 3 N 4 Dual Membrane Cavity

    Yubin Cao, Junzhou He, Wei Si

    Discovered via OpenAlex

  113. Small Methods

    Epx4 Nanopore With Multiple Constrictions for Single‐Molecule Identification

    Ayako Ijuin, Kota Naito, Mana Sato, Virginia Di Toro Mammarella, Nanami Takeuchi, Mauro Chinappi, Yoshikazu Tanaka, Ryuji Kawano

    Discovered via OpenAlex

  114. bioRxiv (Cold Spring Harbor Laboratory)

    A Low-Cost, High-Throughput Design-Build-Test Pipeline for Engineering Genetic Systems: Stress Testing with Complex Structural Proteins

    Harry E. Adamson, James R. McLellan, Khushank Singhal, Melik C. Demirel, Howard M. Salis

    Discovered via OpenAlex

  115. Scientific Reports

    Design of a multi-epitope Staphylococcus aureus vaccine integrating a protein A variant, α-hemolysin, and fibronectin-binding protein A through reverse vaccinology

    Hannia Michelle Prieto-Nevárez, Alejandro Tarango-García, Arturo Gutierrez‐Guerrero, Aristóteles Álvarez-Cardona, Saúl Oswaldo Lugo Reyes

    Discovered via OpenAlex

  116. ACS Omega

    Rational Engineering of the Anthrax Toxin Nanopore Interface for Orthogonal Peptide Classification

    Jennifer M. Colby, Bryan A. Krantz

    Discovered via OpenAlex

  117. Small Methods

    Label‐Free Profiling of Immunoglobulin Isotypes Using Solid‐State Nanopores

    Iris Baffour Ansah, Kevin J. Freedman

    Discovered via OpenAlex

  118. Publons reviews and discussion

    Decision letter for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  119. Publons reviews and discussion

    Author response for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Zongan Wang, Yuqian Liu, Tao Zeng, Denghui Li, Xiao Shi, Jiawen Zhang, Hao Wang, Liuxin Shi, Jiayuan Zhang, Yinqi Bai, Yuning Zhang, Yuliang Dong

    Discovered via OpenAlex

  120. Advanced Sensor Research

    Biosensors for Biotoxins Detection and Monitoring

    Alissa Agerova, Juan F. Bada Juarez, Matteo Dal Peraro

    Discovered via OpenAlex

  121. Iterative International Publishers eBooks

    INNOVATIVE APPROACHES FOR PREDICTIVE SURVEILLANCE, DISEASE PREVENTION, AND SUSTAINABLE HEALTH MANAGEMENT

    Muneshwar Pavankalyan, Suraj Kumar, Muneshwar Tejashwini, Sonam Kamlakar Tijare

    Discovered via OpenAlex

  122. Advanced Functional Materials

    Sub‐10 nm Silicon‐Based Pyramidal Nanopore Enabling High Performance Single Protein Molecule Detection

    Liang Cheng, 蔡初浩, Zhishan Yuan, Li Ma, Maoxiang Hou, Huilong Liu, Yu Xiao, Mengjie Zheng, Yun Chen, X Chen, Ching‐Ping Wong

    Discovered via OpenAlex

  123. Journal of Analysis and Testing

    Peltier-Based Temperature Control Enables High-Bandwidth and Low-Noise Measurements with Solid-State Nanopores

    Yunxuan Li, Gerardo Patiño‐Guillén, Filip Bošković, Thieme T. Schmidt, Simon Brauburger, Raluca‐Elena Alexii, Ulrich F. Keyser

    Discovered via OpenAlex

  124. Biomedical Spectroscopy, Microscopy, and Imaging

    Linear SPAD array for protein sequencing through surface-enhanced Raman spectroscopy

    Veronica Storari, Clarissa Terragni, Francesco Difato, Francesco Tantussi, Jannis Weinacker, Martin Wegener, Francesco De Angelis, Federica Villa

    Discovered via OpenAlex

  125. Foods

    Oxford Nanopore Technologies Sequencing and Targeted Amino Acid Metabolomics Reveal Spatially Segregated Microbial Hijacking and Metabolic Collapse During Trichoderma Infection of Golden Ear Mushroom

    Yijing Xu, Yu Huang, Lei Ye, Jiang Yu, Zhengzhu Huang, Xuezhen Yang, Qing Tian, Bo Zhang, Yuntao Liu, Xiaolin Li

    Discovered via OpenAlex

  126. SPIE Nanophotonics

    Raman sequential readout through nanopores for RNA and protein sequencing

    Francesco De Angelis

    Discovered via OpenAlex

  127. bioRxiv (Cold Spring Harbor Laboratory)

    Chemically tunable permeability of engineered alpha-Hemolysin in synthetic cells

    Elisabeth Bobkova, Anastasia Goetz, Frank Abendroth, Olalla Vázquez, Zakarya Benayad, Viktorija Dujmović, Luis F. Gutiérrez-Mondragón, Scott A. Scholz, Gerhard Hummer, Tobias J. Erb

    Discovered via OpenAlex

  128. Zenodo (CERN European Organization for Nuclear Research)

    Maxwell–Scretching Chain for Nanopore Sequencing and Single-Molecule Electromagnetic Biosensing

    Daniel Scretching

    Discovered via OpenAlex

  129. Angewandte Chemie International Edition

    Large‐Diameter DNA‐Scaffolded Nanopores Enabled by Loosely Packed Peptides for Single‐Molecule Sensing

    Zugui Peng, Daisuke Noshiro, Shiroh Futaki, Ryuji Kawano

    Discovered via OpenAlex

  130. bioRxiv (Cold Spring Harbor Laboratory)

    A framework for peptide identification on commercial nanopore sequencing platforms

    Denis Beslic, Martin Kucklick, Eric Graap, Somayyeh Sedaghatjoo, Bernhard Y. Renard, Stephan Fuchs, Susanne Engelmann, Nils Körber

    Discovered via OpenAlex

    Preprint source: bioRxiv: Bioinformatics

    Curated by Nanopore Foundations & Signal Analysis · DNA-motor-driven transport · Identification · Preprint · Protein analysis

  131. arXiv (Cornell University)

    Label-free SERS Discrimination of Native Proline Hydroxylation at Single-molecule peptide by Deep Learning-assisted plasmonic nanopore

    Yingqi Zhao, Kuo Zhan, Pei-Lin Xin, Yuge Liang, Enock Adjei Agyekum, Matti Putkonen, Shuai Li, Francesco De Angelis, JianAn Huang

    Discovered via OpenAlex

  132. bioRxiv (Cold Spring Harbor Laboratory)

    CDK12 and CDK13 suppress distinct intronic polyadenylation sites

    Molly J. Hulver, Andrew Polevoda, Kai-Lieh Huang, Eric J. Wagner, Paul L. Boutz

    Discovered via OpenAlex

  133. bioRxiv (Cold Spring Harbor Laboratory)

    m 6 A positions polyadenylation in Plasmodium falciparum

    Joshua M Levendis, Amy Distiller, Selina Mussgnug, Lakvin Fernando, Steven Lancashire, Neil David Young, Emma McHugh, Sebastian Baumgarten, Stuart A. Ralph

    Discovered via OpenAlex

  134. The Journal of Physical Chemistry B

    Quantitative Analysis of Protein-Receptor Binding Using Solid-State Nanopores: Accurate Measurement of Dissociation Constants for KREMEN1 and ASGR1 with SARS-CoV-2 Spike RBD Protein

    Matthew O’Donohue, Navod Thyashan, Min Jun Kim

    Discovered via OpenAlex

  135. Small

    Breaking the Size Barrier in Glass Nanopores to 2 nm: A Path to High‐Resolution Biomolecular Fingerprinting

    Xiaoyu Chen, Yaxian Liu, Fan Zhang, An Li, Y T Li, Ran Ji, Rui Hu, Xianhu Sun, Kaikai Chen

    Discovered via OpenAlex

  136. Journal of genetics and genomics/Journal of Genetics and Genomics

    Decoding chromosome organization using proximity labeling and long-read sequencing

    Kewei Xu, Yichen Zhang, James G. Baldwin-Brown, Thomas A. Sasani, Nitin Phadnis, Matthew P. Miller, Ofer Rog

    Discovered via OpenAlex

  137. Publons reviews and discussion

    Decision letter for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  138. ACS Nano

    Comparative Benchmarking of Glass and Silicon Nitride Nanopores for Single-Molecule Detection

    Fei Zheng, Zhan Wang, An Bai, Rui Hu, Xianhu Sun, Jingjie Sha, Qing Zhao, Kaikai Chen, Ulrich F. Keyser

    Discovered via OpenAlex

  139. European Journal of Clinical Microbiology & Infectious Diseases

    β-lactamase genes in clinical isolates of Capnocytophaga canimorsus and description of a novel class D β-lactamase, OXA-1422

    Zoja Germuskova, Eleonora Pronzini, Fanny Wegner, Tim C. Roloff, Tianyan Song, Miroslava Barančeková, Alois Čížek, Michael Addidle, Murray Robinson, Marc Dieu, Chaitanya Tellapragada, Christian G. Giske, Kirstine K. Søgaard, Els M. Broens, Francesco Renzi, Adrian Egli

    Discovered via OpenAlex

  140. Journal of Health Wellness and Community Research

    In Silico Analysis of Extremophilic Bacteria Isolated from Food-Service Environments in Lahore

    Anam Amir, Ayesha Ahmed, Bisma Ali, Anam Amar, Haleema Sadia, Mamona Imran

    Discovered via OpenAlex

  141. Journal of Human Immunity

    A Novel Intronic Deletion Causing “Deficiency in ELF4, X-Linked”

    Bradly M. Bauman, Dinesh Babu Uthaya Kumar, Arati Khanna‐Gupta, Marat Kribis, Amber Hogart Begtrup, Ellory Lopez, Carrie Lucas

    Discovered via OpenAlex

  142. Scientia Sinica Vitae

    Nanopore-Based Biomimetic Peptide Probes for Multiplex and Rapid Detection of Glycopeptide Antibiotics

    Jiaqi Wang, Zhuoqun Su, Jianing Chen, Yue Yang, Guoliang Li

    Discovered via OpenAlex

  143. ACS Nano

    Nanopore Discrimination of Protein–Small-Molecule Drug Complexes at Near-Atomic Resolution

    Junhyeok Jo, Jinsik Kim, Sungbo Hwang, Ki‐Baek Jeong, Seung‐Wook Chi

    Discovered via OpenAlex

  144. Publons reviews and discussion

    Review for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  145. Zenodo (CERN European Organization for Nuclear Research)

    Zero-Parameter Prediction of Physical Observables from the 840-State Manifold

    Elias Oulad Brahim

    Discovered via OpenAlex

  146. Trends in Biochemical Sciences

    Repurposing nanopore sequencing platforms for high-throughput peptide profiling

    Ji Wang, Junyi Chen, Xun Xu

    Discovered via OpenAlex

  147. Nano Letters

    Simultaneous Profiling and Quantification of Tau and Its Phosphorylated Isomers Using Engineered FraC Nanopores

    Yu Xin, Defu Liu, Ma Yk, Zhijing Zhang, Peng Chen, Mengze Wu, Yue Li, Shanchuan Chen, Shixin Yan, Guiqin Song, Lu Chen, Qiantao Wang, Jia Geng, Ke Sun

    Discovered via OpenAlex

  148. Zenodo (CERN European Organization for Nuclear Research)

    Protein Expression Troubleshooting Guide: From Low Yields to Validation

    Materials Science

    Discovered via OpenAlex

  149. Biosensors and Bioelectronics

    Covalently functionalized MoS2 nanopore with amino acids for label-free protein residue discrimination

    Junzhou He, Yubin Cao, Meiting Zeng, Wei Si

    Discovered via OpenAlex

  150. npj 2D Materials and Applications

    Dielectric response of graphene and MoS2 nanopores in the detection of single amino acids

    Longlong Li, Maria Fyta

    Discovered via OpenAlex

  151. World of Medicine : Journal of Biomedical Sciences

    Quantitative RT-PCR Analysis of spa and hla Virulence Gene Expression in Nasal Isolates of Staphylococcus aureus: Association Between Virulence Transcription and Clinical Symptoms

    Hind Tahseen Ibrahim

    Discovered via OpenAlex

  152. Angewandte Chemie International Edition

    Profiling the Structural Heterogeneity of Monomeric α‐Synuclein From the Single‐Molecule Level Using MspA Nanopores

    Xiaoya Zhang, Xinpei Wang, Yue Zhang, Dan Liu, Xing Wei, Yuxi Shao, Zimeng Li, Gang Huang

    Discovered via OpenAlex

  153. Publons reviews and discussion

    Review for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  154. IEEE Dallas Circuits and Systems Conference (DCAS)

    Direction-Aware Signal Analysis for Protein Translocation in Multilayer Solid-State Nanopores

    Kamruzzaman Joty, Chaoming Gu, Sangyoup Lee, Min Jun Kim

    Discovered via OpenAlex

  155. Zenodo (CERN European Organization for Nuclear Research)

    Amino Acid Sequence Representation Methods: From Foundational Encoding to Advanced AI Applications

    protein engineering

    Discovered via OpenAlex

  156. bioRxiv (Cold Spring Harbor Laboratory)

    Detection of attomolar concentration of heart-type fatty acid binding protein using ion current rectification sensing with conical SiO 2 nanopores

    Nahid Afrin, Shankar Dutt, María Eugenia Toimil‐Molares, P. Kluth

    Discovered via OpenAlex

  157. Zenodo (CERN European Organization for Nuclear Research)

    Lactylation Dynamics in Myxozoan Proteins

    Amr G. A. Ibrahim, Juliana Naldoni, Antonio Maia, Juliano Rodrigues Sangalli, Caroline Munhoz Meira, Rayline Thaimenne Alves Figueredo, Beth Okamura, Paul Long, Edson A. Adriano

    Discovered via OpenAlex

  158. JACS Au

    Nanopore Fingerprinting of Neurodegenerative Proteins and Phosphoproteins within a Minute

    Kai‐Li Xin, Linlin Zhang, Min Li, Shao-Chuang Liu, Han-Qing She, Yi‐Lun Ying, Yi-Tao Long, Zheng‐Li Hu

    Discovered via OpenAlex

  159. Zenodo (CERN European Organization for Nuclear Research)

    CCSB-DFCI/pooled-Y2H: Initial IGVF DACC upload

    Luke Lambourne

    Discovered via OpenAlex

  160. Cancer Research

    Abstract 3983: Condensate dynamics drive adaptive METTL3 inhibitor resistance

    Xuejing Yang, Maria Eleftheriou, Eliza Yankova, Siân Evans, Theodore M. Nelson, Isaac Wakiro, Emily Batchelor, Kathryn Chang, João M.L. Dias, Aspen Pierson, Genevieve Girard, Rhoshini Raghuraman, Demetrios Aspris, Vidur Tandon, Grace Y. Q. Han, Lydia P. Tsamouri, Hanzhi Luo, James D Russell, Maria Teresa Béjar, Maria Pilar Alcolea, Ajay Edakkara, Muxin Gu, Rupert Öllinger, Malgorzata Gozdecka, Brian J.P. Huntly, Roland Rad, Lina Vasiliauskaitė, Yaara Ofir-Rosenfeld, George S. Vassiliou, Yuanming Cheng, Mansi Arora, Richard C. Centore, Christopher E. Mason, Oliver Rausch, Shilpi Arora, Konstantinos Tzelepis, Michael G. Kharas

    Discovered via OpenAlex

  161. Cancer Research

    Abstract 7293: The impact of oxygen exposure on clinical biomarkers - an underrecognized source of pre-analytic variability

    Ruizhong Wang, Adedeji Kolawole Adebayo, Stephanie Adama, Steven M. Westphal, Hala Fatima, Carla Suzanne Fisher, Hongyu Gao, Yunlong Liu, Ryla G. House, George Earl Sandusky, Sean McCabe, Zhongping He, Jamunabai Prakash, Amber Roberts, Matt E. Thomas, Mohammad Al‐Haddad, Sujani Yadlapati, Pam Rockey, William Berry, Mary B. James, Rana German, Emily M. Nelson, April M. Giron, Troy Moeller, Noah Xique, Kathy D. Miller, Harikrishna Nakshatri

    Discovered via OpenAlex

  162. PubMed

    Data Sieving for Scalable Real-Time Multichannel Nanopore Sensing

    Matteo Cartiglia, Natan Biesmans, Wannes Peeters, Wouter Botermans, Koen Ongena, Liam Vandekerckhove, Wouter Renckens, Eric Beamish, Elizabeth Skelly, Kirill A. Afonin, Pol Van Dorpe, Sanjin Marion

    Discovered via OpenAlex

  163. Rice Science

    Global Patterns of Stage-Specific Alternative Polyadenylation in Rice Tillering Revealed by Nanopore Long Read Sequencing and Proteomics

    Xinyi LI, Junying Huang, Dahu Zhou, Yicong Cai, Xiaorong Chen, Lifang HU, Linjuan Ouyang, Junru Fu, Qingshun Quinn Li, Haohua He, Haihui Fu

    Discovered via OpenAlex

  164. Analytical Chemistry

    Zero-Dalton Resolution in Nanopore Peptide Recognition

    Mazdak Afshar Bakshloo, Leïla Bechtella, Jianjun Tao, Alina Asandei, Camille Dejoux, Manuela Pastoriza‐Gallego, Jérôme Mathé, Nathalie Basdevant, Régis Daniel, Abdelghani Oukhaled

    Discovered via OpenAlex

  165. Research Repository (Delft University of Technology)

    Nanopore Sequencing of Peptides: Terminal Conjugation and PTM Detection

    Justas Ritmejeris

    Discovered via OpenAlex

  166. 4TU.ResearchData

    Data and scripts supporting chapter 6 of the PhD thesis: cDNA display for nanopore sequencing of peptides

    Justas Ritmejeris

    Discovered via OpenAlex

  167. ACS Nano

    Digital Immunoassays for Sensitive Quantification of Blood Biomarkers Using Solid-State Nanopores

    Liqun He, Breeana Elliott, Philipp Mensing, Kyle Briggs, Michel Godin, Jonathan D. Flax, James L. McGrath, Vincent Tabard‐Cossa

    Discovered via OpenAlex

  168. ACS Applied Nano Materials

    Directional Single-Protein Transport Enabled by 2D Material Heterointerfaces in Solid-State Nanopores: Implications for Single-Molecule Sensing

    Kamruzzaman Joty, Chaoming Gu, Sangyoup Lee, Min Jun Kim

    Discovered via OpenAlex

  169. ACS Photonics

    Single-Molecule Peptide Discrimination via Flow-Through SERS and Machine Learning

    Kirill M. Khabarov, Ilaria Micol Baldi, María Blanco-Formoso, Foroogh Khozeymeh, Veronica Storari, Federica Villa, Francesco Difato, Francesco Tantussi, Francesco De Angelis

    Discovered via OpenAlex

  170. Journal of the American Chemical Society

    Electroosmotic Flow-Driven Nanopore Translocation of Large, Conformationally Dynamic Proteins: Overcoming Steric and Electrostatic Barriers

    Iris Baffour Ansah, Sushmita Joardar, Kevin J. Freedman

    Discovered via OpenAlex

  171. Analytical Chemistry

    Ag Plasmonic Nanopore-Enabled Single-Molecule SERS Identification of Amino Acids

    Zheng Wang, Yanru Ding, Cai Gao, Wang Li, Yue Yin, Xing‐Hua Xia, Xiao-Lei Xing, Lina Ji, Kang Wang

    Discovered via OpenAlex

  172. bioRxiv (Cold Spring Harbor Laboratory)

    β-barrel nanopores designed for insertion into thick block copolymer membranes

    Edo Vreeker, Adina Sauciuc, Fabian Grünewald, Ali Hammoudi, Giovanni Maglia

    Preprint source: bioRxiv: Biophysics

  173. Physics of Life Reviews

    A biophysicist’s guide to translocation of double-stranded nucleic acids through solid-state nanopores

    Simon Brauburger, Ulrich F. Keyser

    Discovered via OpenAlex

  174. Nature Communications

    Catalytic Proximal Protein Oligomerization as an Anti-Tumor Strategy Targeting WDR5

    Yizheng Fang, Li Jiang, Feifan Wang, Yihui Zhou, Jie Cen, Yuxin Yang, Haiyang Wang, Qi Chen, Yushen Lin, Tingting Wang, Hongxia Xu, Yongping Yu, Cheng‐Liang Zhu, Qiaojun He, Bo Yang, Chun Zhou, Wenteng Chen, Longhua Tang, Ji Cao

    Discovered via OpenAlex

  175. Publons reviews and discussion

    Review for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  176. Publons reviews and discussion

    Decision letter for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  177. bioRxiv (Cold Spring Harbor Laboratory)

    Discovery, characterisation and optimisation of bicyclic peptide inhibitors that disarm Staphylococcus aureus α-hemolysin

    Jonathan Whiteside, Nick Lewis, L. Diaz Saez, Hector Newman, Sarah Newell, Tazmin T. Martin, Jack Butler, Michael J. Skynner, Michael J. Dawson, Paul Beswick, Christopher Gerard Dowson, Catherine E Rowland

    Discovered via OpenAlex

  178. Autophagy

    α-hemolysin targets LGALS3 (galectin 3) to promote intracellular survival of Staphylococcus aureus via lysosomal disruption and autophagy inhibition

    Yanhao Zhang, Zhuo Zhao, Pu Han, Jianxun Qi, Mingzhou Zhang, Liting Wang, Yumin Meng, Jing Li, Y S Yang, Lie Chen, Jinyong Zhang, Jiang Gu, Ping Luo, Weijun Zhang, Liangbo Sun, Zou Quanming, Hao Zeng

    Discovered via OpenAlex

  179. Colloidal Nanoparticles for Biomedical Applications

    MoS2 nanopores for single-molecule protein sequencing

    Adrien Nicolaı̈

    Discovered via OpenAlex

  180. Publons reviews and discussion

    Review for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  181. Publons reviews and discussion

    Review for "Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments"

    Discovered via OpenAlex

  182. Nature Communications

    Scaling laws in confined media applied for biomarker detection

    Yuhua Cai, Benjamin Cressiot, Mathias Winterhalter, Sébastien Balme, Juan Pelta, Laurent Bacri

    Discovered via OpenAlex

  183. Annual Review of Analytical Chemistry

    The Next Generation of Protein Sequencing and Analysis Methods

    K. C. Wong, Mattias Tolhurst, Oren A. Fox, Safwan Diwan, Nicholas Bogard, Jeff Nivala

    Curated by Nanopore Foundations & Signal Analysis · Protein analysis · Review

  184. Nature Communications

    Nanopore-based massively parallel sensing for peptide profiling and protein identification

    Ji Wang, Junyi Chen, Hailin Pan, Fengqin Luo, Wenbing Qin, Huixian Zeng, Xilong Yuan, Yuchen Qiao, Yunfeng Zhang, Yishuo Zhang, Dapeng Wang, Liang Shen, Zhiwei Zhai, Qianhua Zhu, Yuqing Deng, Xiaojing Sheng, Qingqing Xie, Yuning Zhang, Xu Yan, Tao Zeng, Mengzhe Shen, Yinqi Bai, Bo Teng, Yuxiang Li, Chuanyu Liu, Ou Wang, Yuliang Dong, Siqi Liu, Xun Xu

    Discovered via OpenAlex

  185. Universitätsbibliothek Stuttgart

    Replication Script for "Deep Learning-Driven Peptide Classification in Biological Nanopores"

    Julian Hoßbach, Samuel Tovey, Sandro Kuppel, Tobias Ensslen, Jan Claas Behrends, Christian Holm

    Discovered via OpenAlex

  186. ACS Sensors

    High-Throughput Human Histone Detection by an Engineered Actinoporin Nanopore

    Marija Srnko, Gašper Šolinc, Ana Crnković, Franci Merzel, Michael A. Jordan, Elizabeth Jayne Wallace, Marjetka Podobnik, Gregor Anderluh

    Discovered via OpenAlex

  187. eLife

    Reviewer #3 (Public review): Cytoplasmatic polyadenylation of mRNA by TENT5A is critical for enamel mineralization

    Discovered via OpenAlex

  188. eLife

    Author response: Cytoplasmatic polyadenylation of mRNA by TENT5A is critical for enamel mineralization

    Goretti Aranaz Novaliches, Olga Gewartowska, František Špoutil, Seweryn Mroczek, Pavel Talacko, Karel Harant, Ana-Matilde Augusto-Vale, Irena Krejzova, Carlos Eduardo Madureira Trufen, Pawel Krawczyk, Aleš Benda, Vendula Novosadová, Radislav Sedlacek, Andrzej Dziembowski, Jan Prochazka

    Discovered via OpenAlex

  189. eLife

    Reviewer #1 (Public review): Cytoplasmatic polyadenylation of mRNA by TENT5A is critical for enamel mineralization

    Discovered via OpenAlex

  190. eLife

    Cytoplasmatic polyadenylation of mRNA by TENT5A is critical for enamel mineralization

    Goretti Aranaz Novaliches, Olga Gewartowska, František Špoutil, Seweryn Mroczek, Pavel Talacko, Karel Harant, Ana-Matilde Augusto-Vale, Irena Krejzova, Carlos Eduardo Madureira Trufen, Pawel Krawczyk, Aleš Benda, Vendula Novosadová, Radislav Sedláček, Andrzej Dziembowski, Jan Procházka

    Discovered via OpenAlex

  191. eLife

    eLife Assessment: Cytoplasmatic polyadenylation of mRNA by TENT5A is critical for enamel mineralization

    Noriaki Ono

    Discovered via OpenAlex

  192. eLife

    Reviewer #2 (Public review): Cytoplasmatic polyadenylation of mRNA by TENT5A is critical for enamel mineralization

    Discovered via OpenAlex

  193. PLoS Computational Biology

    A dynamical anthrax toxin nanopore biosensor for high-fidelity single-peptide classification

    Jennifer M. Colby, Bryan A. Krantz

    Discovered via OpenAlex

  194. Human Genomics

    Exon skipping as a potential diagnostic biomarker in colorectal cancer: an integrated epigenomic-transcriptomic analysis

    Lili Zhang, Jian Cui, Jinxin Shi, Jiahui Cai, Tianhan Sun, Gaoyuan Sun, Yifei Li, Hexin Li, Siyuan Xu, Xiaokun Tang, Ziwei Chen, Hongyuan Cui, Fei Xiao, Gang Zhao

    Discovered via OpenAlex

  195. Analytical Chemistry

    Triple-Response Peptide Probe for Simultaneous Monitoring the Activity of Three Proteases through a Single Nanopore

    Yao Jiang, Baixue Chu, Wenzhi Ma, Min Liu, Shusheng Zhang, Dongmei Xi

    Discovered via OpenAlex

  196. Biophysical Journal

    BPS2026 - Full-length transport of unfolded Tau protein through MspA nanopores

    Yu S. Chen, Meni Wanunu, Xialin Zhang, Noé Quittot, Bradley T. Hyman

  197. Biophysical Journal

    BPS2026 - Reverse translocation and constriction engineering improve MspA nanopore protein fingerprinting

    Xialin Zhang, Yuhaohua Zheng, Parker Hitt, Zhuoyu Zhang, Dinara Boyko, Meni Wanunu

  198. Biophysical Journal

    BPS2026 - Design of an intrinsically anion-selective CytK nanopore to tune electroosmotic flow and resolution for full-length protein fingerprinting

    Jose M. Cisneros Mandujano, Rik Dhar, Meni Wanunu

  199. Biophysical Journal

    BPS2026 – Peptide biomarker discrimination and identification: From sequence to conformational dynamics using nanopores

    Laura R. Ratinho, Luca Iesu, Bénédicte Thiébot, Laurent Bacri, Juan Pelta, Benjamin Cressiot

    Discovered via OpenAlex

  200. Biophysical Journal

    BPS2026 - Capturing the complete picture: Multiscale modeling of protein transport through nanopores

    Lan Yang, Ngoc Phuong Dung Ho, Christopher Edmonds, Eric Pooser, Roman Aranda, Katherine Young, James C. Gumbart

    Discovered via OpenAlex

  201. Biophysical Journal

    BPS2026 – Extracellular protein scaffolds for de novo peptide nanopores to advance amino acid identification

    Ayaka Nakada, Ryuji Kawano

    Discovered via OpenAlex

  202. Biophysical Journal

    BPS2026 - Peptide sequencing with exopeptidase-assisted nanopore

    Ying-Huan FU, Yi‐Tao Long, Yi-Lun Ying

    Discovered via OpenAlex

  203. iScience

    Following the central dogma: Nanopore sequencing from DNA and RNA to proteins

    Yutong Wang, Qian Han, Yilong He, Shumin Deng, Ziwei Huang, Ziyan Zhang, Shuaijian Dai, Zhuxin Dong

    Discovered via OpenAlex

  204. UNSWorks (University of New South Wales, Sydney, Australia)

    Optical Nanopore Translocation Biosensor for UltraSensitive Single-Molecule Quantification of Nucleic Acids

    Bobmanuel Echeonwu

    Discovered via OpenAlex

  205. bioRxiv

    PTM-Driven Reshaping of the Peptide Translocation Landscape in Bilayer Graphene Nanopores

    Upadhyaya, A, Sur, P, Varma, M, Maiti, P. K

    Discovered via OpenAlex

    Preprint source: bioRxiv: Biophysics

  206. Analytical Chemistry

    Single-Molecule Analysis of Glycopeptide Antibiotic–Target Interactions Using Nanopore-Based Biomimetic Probes

    Zhuoqun Su, Yan Zhao, Liuxin Jiao, Di Wu, Yongning Wu, G. B. Li

    Discovered via OpenAlex

  207. bioRxiv (Cold Spring Harbor Laboratory)

    dirCLIP profiles variant-specific RNA-protein interactions via nanopore long-read sequencing

    Mohamed N. M. Bahrudeen, Mauro Scaravilli, Zileena Zahir, Katrina Woodward, Timo Ahola, Madara Ratnadiwakara, Jan Kaslin, Fionna E. Loughlin, Nikolay E. Shirokikh, Minna‐Liisa Änkö

    Discovered via OpenAlex

  208. Zenodo (CERN European Organization for Nuclear Research)

    Nanopore long-read alternative polyadenylation and proteomics datasets of rice tillering development

    Haihui Fu, Xinyi Li

    Discovered via OpenAlex

  209. Nucleic Acids Research

    Yeast elongation factor homolog New1 protects a subset of mRNAs from degradation by no-go decay

    Max Müller, Lena Sophie Tittel, Elisabeth Petfalski, Kaushik Viswanathan Iyer, Alina-Andrea Kraft, Stefan Pastore, Tamer Butto, Marie‐Luise Winz

    Discovered via OpenAlex

  210. The Journal of Physical Chemistry B

    Molecular Mechanisms of Spontaneous Peptide Translocation through BC 3 /C 3 N Heterostructure Nanopores: A Molecular Dynamics Study

    Xiao Jia, Yuanyuan Qu, Yong Qiang Li, Xiangdong Liu, Mingwen Zhao, Weifeng Li, Yang Liu

    Discovered via OpenAlex

  211. Biophysical Journal

    Peptide properties predict multistate translocation kinetics via protective antigen nanopores

    Jennifer M. Colby, Bryan A. Krantz

    Discovered via OpenAlex

  212. bioRxiv (Cold Spring Harbor Laboratory)

    Single-molecule identification of full-length proteins with single-amino-acid resolution using nanopores

    Andrea Bonini, Chunzhe Lu, Luca Mantovanelli, Roderick Corstiaan Abraham Versloot, Alwin Jansen, Peter O Connell Stack, Vasiliki Tsousi, Pascal Knecht, Kathrin Lang, Andrew Heron, Giovanni Maglia

    Preprint source: bioRxiv: Biophysics

    Curated by Nanopore Foundations & Signal Analysis · Electroosmotic flow · Identification · Preprint · Protein analysis · Unfoldase-driven transport

  213. Analytical Chemistry

    Fouling-Proof Nanopore for Detecting Caspase-3 in Complex Biological Fluids

    S.-H. Zhang, Ruina Zheng, Weiling Wu Zhi Yu, Y. Q. Mei, Jin‐Xuan Fan, B Y Liu, Yuan-Di Zhao, Wei Chen

    Discovered via OpenAlex

  214. bioRxiv (Cold Spring Harbor Laboratory)

    EZ-DMS – A Simple and Accessible Protocol and Software Package for Deep Mutational Scanning of Virus Proteins

    Aaron Nicholas Gillman, Madeline M Broghammer, Samuel A McCarthy-Potter, Rohith Rao Vujjini, Cassian M Birler, Alex B. Kleinpeter, Hillel Haim

    Discovered via OpenAlex

  215. Oxford University Research Archive (ORA) (University of Oxford)

    Nanopore characterisation of Post-Translational Modifications (PTMs) on protein concatemers

    Wei-Hsuan Lan

    Discovered via OpenAlex

  216. Nanoscale

    Mechanism of polypeptide translocation through gold nanopores in view of sequencing applications

    Mirko Vanzan, Agostino Migliore, María Blanco-Formoso, Francesco De Angelis, Stefano Corni

    Discovered via OpenAlex

  217. Soft Matter

    Nanopore sequencing with proteins: synchronization and dischronization of molecular dynamics simulations with laboratory and industrial developments

    Zongan Wang, Yuqian Liu, Tao Zeng, Denghui Li, Xiao Shi, Jiawen Zhang, Hao Wang, Liuxin Shi, Jiayuan Zhang, Yinqi Bai, Yuning Zhang, Yuliang Dong

    Discovered via OpenAlex

  218. Nanoscale

    pH-Responsive peptide nanopores are stabilized by lipid and water-mediated hydrogen bonding networks

    Bondar Ana-Nicoleta, Samo Lešnik, Kalina A. Hristova, William C. Wimley

    Discovered via OpenAlex

  219. Chemical Communications

    Self-assembling peptides construct supramolecular materials

    Li-Ying Wang, Jian-Xiao Liang, Jingyao Wang, Min Han, Hongwei An, Hao Wang

    Discovered via OpenAlex

  220. Analytical Methods

    Screening of aggregation properties of cyclic peptides by protein nanopores

    Hang Yang, Wenqi Lu, Dongdong Wang, Xiaoyu Zhang, Zan Li, Minmin Li, Haijuan Qin, Jiaqi Li, Guangyan Qing

    Discovered via OpenAlex

  221. Code Ocean

    Catalytic Proximal Protein Oligomerization (CaPPO) as a Novel Anti-Tumor Strategy Targeting WDR5

    Yizheng Fang, Jiang, Li, Feifan Wang, Yihui Zhou, Jie Cen, Yuxin Yang, Haiyang Wang, Qi Chen, Yushen Lin, Tingting Wang, Hongxia Xu, Yongping Yu, Cheng‐Liang Zhu, Qiaojun He, Chun Zhou, Wenteng Chen, Longhua Tang, Bo Yang

    Discovered via OpenAlex

  222. Clinical and Translational Medicine

    Single‐molecule electrical protein fingerprinting in solid‐state nanopores

    Neeraj Soni, Amit Meller

    Discovered via OpenAlex

  223. Physical Chemistry Chemical Physics

    Twist, grind, translocate: pepper-mill dynamics of MSPA protein pore during ssDNA transport

    Priya Dey, Brandon Meza-González, Ganesh N. Pandian, Daniel M. Packwood

    Discovered via OpenAlex

  224. The Analyst

    Enhanced detection of low-surface-charge nanoparticles via pressure regulation in solid-state nanopores

    Tixi He, Yin Zhang

    Discovered via OpenAlex

  225. 动物学研究

    Amphibian βγ-CAT Defines a Pore-Forming Protein System for Nutrient Acquisition and Metabolic Flexibility

    Zhang Yun, Zhang Jiarui, Li Shengan, Shi Zhihong, Liu Lingzhen, Bian Xianlin, Wang Qiquan, Li Wenhui, Xiang Dong Yang, 中科院昆明动物研究所

    Discovered via OpenAlex

  226. Analytical Methods

    Nanopore readable activity probes for ribosomal inactivating protein (RIP) toxins

    M. E. TURNER, Ashley M. Bradley, Kristin D. Victry, Bailey G. Knight, Rachel E. Richardson, Natalie M. Winans, Lisa Bramer, Tyler J. Sagendorf, Fanny Chu, Kristin M. Engbrecht, Jennifer M. Mobberley, David S. Wunschel

    Discovered via OpenAlex

  227. Infoscience (Ecole Polytechnique Fédérale de Lausanne)

    Nanopore Technology for Protein Identification and Functional Analysis

    Verena Rukes

    Discovered via OpenAlex

  228. Virtual Community of Pathological Anatomy (University of Castilla La Mancha)

    A 128 × 1 SPAD-Camera for Protein Sequencing through Surface-Enhanced Raman Spectroscopy

    V. Storari, C. Terragni, Francesco Difato, Francesco Tantussi, Jannis Weinacker, M. Wegener, F. De Angelis, F. Villa

    Discovered via OpenAlex

  229. Socio-Environmental Systems Modeling

    Bi-functionalized peptide-oligonucleotide conjugate and process for the preparation thereof

    Bauke Albada, Jasper W. van de Sande

    Discovered via OpenAlex

  230. Infoscience (Ecole Polytechnique Fédérale de Lausanne)

    Scanning ion-conductance spectroscopy and force microscopy of biomolecules

    Helena Miljkovic

    Discovered via OpenAlex

  231. Physical Chemistry Chemical Physics

    Kinetic control and entropic barrier modulation of protein unfolding during translocation through stepped graphene nanopores

    Yanlin He, Junzhou He, Wei Si

    Discovered via OpenAlex

  232. KU ScholarWorks (The University of Kansas)

    Nanofluidic Platforms for Single-Molecule Protein Characterization and Peptide Fingerprinting of Proteins

    Suresh Shivanka Patabendi Hangilige

    Discovered via OpenAlex

  233. Methods in molecular biology

    Nanopore-Based Detection of Protein Posttranslational Modifications

    Meng‐Yin Li, Yan Gao, Jie Jiang, Yi-Tao Long

    Discovered via OpenAlex

  234. Ghent University Academic Bibliography (Ghent University)

    Ultrathin Ga₂In₂O₃–Ag plasmonic composite membranes for dual-mode photonic and spectroscopic detection of the biomolecules

    Mohammad Karbalaei Akbari, Serge Zhuiykov

    Discovered via OpenAlex

  235. Methods in molecular biology

    Fixed Aptamer-Functionalized DNA Carriers for Protein Detection with Movable Nanopores

    Helena Miljkovic, Wayne Yang, Aleksandra Rađenović

    Discovered via OpenAlex

  236. Methods in molecular biology

    Engineering a Monomeric Nanopore Scaffold for Multiplexed Protein Detection

    Joshua C. Foster, Min Chen

    Discovered via OpenAlex

  237. Poster

    Mo-MLO-04 - Centrifugal Microfluidic Automation of Protein Sample Preparation for Nanopore Sensing

    Carolin Kleber, C. Hensel, Ida Suppanz, G. Mittler, Michelle Hinrichs, S. Gutsch, Tobias Hutzenlaub, Felix von Stetten, Nils Paust, A. Schreiber, Jan-Niklas Klatt

    Discovered via OpenAlex

  238. University of Michigan Library

    Peeling Back the Layers of Escherichia coli Chromatin Architecture

    Sonya Royzenblat

    Discovered via OpenAlex

  239. ANU Open Research (Australian National University)

    Application of Conical Nanopores in SiO2 Membranes for Molecular Separation and Biosensing

    Nahid Afrin

    Discovered via OpenAlex

  240. Analytical Chemistry

    Continuous, Low Latency Estimation of the Size and Shape of Single Proteins from Real-Time Nanopore Data

    Yuanjie Li, Cuifeng Ying, Michael R. Mayer

    Discovered via OpenAlex

  241. Veterinary Biomedical and Clinical Journal

    Development of Bioinformatics Based Detection and Building Model of The mspA Gene in Mycolicibacterium fortuitum

    Najma Ramadhani, Siti Kurniawati, Roro Titah Pinasti, Diaz Ayu Savitry, Averoes Gibraltar Makta

    Discovered via OpenAlex

  242. Analytical Chemistry

    Design Strategies toward Precise Protein Sequencing with Biological Nanopores

    Ying-Yuan Cui, Lei Yang, Jian-Nan Zhao, Wen-Chuan Lai, GU Zhi-yuan

    Discovered via OpenAlex

  243. arXiv (Cornell University)

    Amino Acid Translocation Through a Dual Nanopore Platform

    Chih-Yuan Lin, Pia Bhatia, Alexandra Sofia Uy-Tioco, Kyril Kavetsky, Celia Morral, Rachael Keneipp, N. Pradeep, Marija Drndić

    Discovered via OpenAlex

  244. ACS Nano

    Selective and Controllable Trapping of Single Proteins in Nanopores Using Reversible Covalent Bonds

    Yuanjie Li, Saurabh Awasthi, Peng Liu, Anna D. Protopopova, Michael Mayer

    Discovered via OpenAlex

  245. Nano Research

    Functionalized protein nanopores: Strategies and applications

    Ke Sun, Mengze Wu, Xin Yu, Yue Li, Ming‐Han Li, Jinna Wang, Yuan Ju, Shengli Zhang, Jia Geng

    Discovered via OpenAlex

  246. Biophysical Journal

    Dynamic gating by ϕ-clamp loop controls peptide translocation through the anthrax toxin nanopore

    Jennifer M. Colby, Bryan A. Krantz

    Discovered via OpenAlex

  247. Infection Genetics and Evolution

    Gaining insights into novel pathogen hosts: Characterisation of Actinomyces weissii strains isolated from companion animals

    Beyza Cirak, Antonia Kreitlow, Maria Borowiak, Christiane Hoffmann, Christoph Lämmler, Carsten Heydel, Christa Ewers, Burkhard Malorny, Madeleine Plötz, Amir A. Abdulmawjood

    Discovered via OpenAlex

  248. ChemRxiv

    Fluorosequencing without terminal residue cleavage

    G. Sampath

    Discovered via OpenAlex

  249. Nano Letters

    Nanopore Fingerprinting of Structurally Diverse Amino Acid-Conjugated Bile Acids

    Yuchen Cao, Minmin Li, Jing Wang, Zan Li, Guangyan Qing

    Discovered via OpenAlex

  250. Analytical Chemistry

    Accurate Single-Particle Tracking and Diffusion Measurement in Freestanding Lipid Bilayers and Model Membranes

    Lily Anne Van Ye, Richard D. Michael, Joshua J. Meyer, Sophia M. Peña, Derek J. Bailey, Lisa M. Keranen‐Burden, Daniel L. Burden

    Discovered via OpenAlex

  251. Lirias

    Onderzoek naar moleculaire nanotechnologie voor de detectie van individuele moleculen met vaste-stof nanoporiën

    Gevers, Juliette

    Discovered via OpenAlex

  252. Bioinformatics

    NanoSSL: attention mechanism-based self-supervised learning method for protein identification using nanopores

    Yong Xie, Jindong Li, Ziyan Zhang, Bin Meng, Shuaijian Dai, Yuchen Zhou, Eamonn Kennedy, Niandong Jiao, H. Isaac Chen, Zhuxin Dong

    Discovered via OpenAlex

  253. Advanced Functional Materials

    In Situ Reactive Oxygen Species‐Generating Semiconductor Nanopore for Real Time Peptide Oxidation Analysis

    Yanmei Ma, Lianxin Wang, Fanwei Kong, Mei Jun Yang, Tiantian Su, Junli Guo, Ye Mei, Yan‐Yan Song

    Discovered via OpenAlex

  254. The Journal of Physical Chemistry B

    Temperature-Dependent Transport of Charged Amino Acids in Gold Plasmonic Nanopores

    Mingtao Lin, Licheng Zhan, Mingming Ding

    Discovered via OpenAlex

  255. bioRxiv

    MetaPointFinder: Detection of Antimicrobial Resistance-Conferring Point Mutations (ARMs) from Metagenomic Reads

    Zomer, A. L, Nooij, S, Carter, C, Mather, A. E

    Discovered via OpenAlex

    Preprint source: bioRxiv: Bioinformatics

  256. The Journal of Physical Chemistry B

    Effects of Nanopore Confinement on the Conformational, Dynamical, and Self-Assembly Properties of an FG-Repeat Peptide

    Wancheng Zhao, Wai‐Ming Yau, Robert Tycko

    Discovered via OpenAlex

    Preprint source: bioRxiv: Biophysics

  257. Proceedings of the National Academy of Sciences

    Cryogenic light microscopy of vitrified samples with angstrom precision

    Hisham Mazal, Franz-Ferdinand Wieser, Daniel Bollschweiler, Vahid Sandoghdar

    Discovered via OpenAlex

  258. The Analyst

    Single-molecule nanopore profiling of protein domain fragment dynamics and aggregation

    Dapeng Chen, Fei Zheng, Guangle Qin, Chaofan Ma, Wei Liu, Lichun Zou, Haiyan Wang, Jingjie Sha

    Discovered via OpenAlex

  259. Zenodo (CERN European Organization for Nuclear Research)

    Harmonic Frequency Interaction with Histone H3: N-Model Computational Analysis Using Base 256 Hz Without Calibration

    Malik, Muhammad Usman

    Discovered via OpenAlex

  260. ACS Nano

    De Novo Design of α-helical Peptide Nanopores for Single-Molecule Detection Using Helix Packing Motifs

    Zugui Peng, Masataka Usami, Ayaka Nakada, Yusuke Sekiya, Shoko Fujita, Batsaikhan Mijiddorj, Izuru Kawamura, Ryuji Kawano

    Discovered via OpenAlex

  261. Nanoscale

    Tracking single-molecule ferritin reassembly and disassembly using polymer-coated nanopores

    Mahya Assadipapari, Alireza Soleimanian, Max Adam, Jiali Li, Arman Yousefi, Saaman Zargarbashi, Lei Xu, Max F. K. Wills, Hesna Kara, Marina Santana Vega, Alasdair W. Clark, Andrew J. Hudson, Jian‐An Huang, Mohsen Rahmani, Cuifeng Ying

    Discovered via OpenAlex

  262. Current Opinion in Biotechnology

    Molecular diagnostics for infectious disease and cancer based on glass capillary nanopore sensing

    Ryogo Higashi, Izumi Shibayama, Jiajue Ji, Tao Ren, Iiro M. A. Kiiski, Nanami Takeuchi, Ryuji Kawano

    Discovered via OpenAlex

  263. Journal of Nanobiotechnology

    Single-molecule sensing with an anthrax nanopore enabled by pH-asymmetric ionic liquids

    Zhirui Zhang, Yan Wang, Shuo Zhou, Yunjiao Wang, Shi-Long Liu, Xiyun Guan, Liang Wang

    Discovered via OpenAlex

  264. Advanced Materials

    Nanopore‐Based Label‐Free and Single‐Molecule Sequencing toward Precision Diagnosis

    Yufan Cui, Yueming Zhai, Yongxi Zhao, Xingyi Ma

    Discovered via OpenAlex

  265. International Journal of Molecular Sciences

    Molecular Epidemiology, Clinical Manifestations, Decolonization Strategies, and Treatment Options of Methicillin-Susceptible Staphylococcus Aureus Infection in Neonates

    Aikaterini I. Nikolaou, Maria S. Baltogianni, Niki Dermitzaki, Chrysanthi Maria Tsiogka, Nikitas Chatzigiannis, Foteini Balomenou, Vasileios I. Giapros

    Discovered via OpenAlex

  266. Zenodo (CERN European Organization for Nuclear Research)

    Transition Fingerprints: A Needle‑Eye Principle for Detecting Minimal Life and Trojan Entities Across Scales

    margolin, ido

    Discovered via OpenAlex

  267. ChemRxiv

    Fluorosequencing without Edman degradation

    G. Sampath

    Discovered via OpenAlex

  268. Global Biodiversity Information Facility

    Mitogenome of a new Ramazzottius species (Tardigrada: Eutardigrada: Ramazzottiidae) discovered in rock pools along with its temperature and desiccation-related proteins repertoire

    Matteo Vecchi, Daniel Stec

    Discovered via OpenAlex

  269. Zenodo (CERN European Organization for Nuclear Research)

    3annabellem/CaptureNet-Deep: CaptureNet-Deep v1.0

    3annabellem

    Discovered via OpenAlex

  270. Zenodo (CERN European Organization for Nuclear Research)

    Title: "Stein Mechanics" or a theory that combines Einstein's theory of relativity with quantum mechanics. "제목:슈타인역학"

    kym, unho

    Discovered via OpenAlex

  271. bioRxiv

    Terminal conjugation enables nanopore sequencing of peptides

    Ritmejeris, J, Chen, X, Albada, B, Dekker, C

    Preprint source: bioRxiv: Biophysics

  272. Sensors

    Solid-State Nanopore Single-Molecule Analysis of SARS-CoV-2 N Protein: From Interaction Exploration to Small-Molecule Antagonism

    Xiaoqing Zeng, Shinian Leng, Wenhao Ma, Zhenxin Wang, Huaming Zhang, Xiaowei Feng, Jianchao Li, Junsen Wang, Ting Weng, Rong Tian, Shixuan He, Shaoxi Fang, Bohua Yin, Liyuan Liang, Yajie Yin, Deqiang Wang

    Discovered via OpenAlex

  273. Small Methods

    Recent Advances and Emerging Trends in Nanopore‐Based Single‐Molecule Sensing of Proteins

    Zhen Zhang, Jingjie Sha, Guangle Qin, Dapeng Chen, Wei Si, Qianqian Wang, Lei Liu

    Discovered via OpenAlex

  274. arXiv (Cornell University)

    Identification of Capture Phases in Nanopore Protein Sequencing Data Using a Deep Learning Model

    Martin, Annabelle, Daphne Kontogiorgos-Heintz, Jeff Nivala

  275. Blood

    Clonal persistence of BRAFV600E under MEK inhibition in histiocytosis

    Marzieh Nashvi, David Fandrei, Florian Houdu, Paul Quentric, Irena Antonia Ungureanu, Matthias Papo, Lise Drouart, Marion Peyre, Jessica Rengassamy, Zofia Hélias‐Rodzewicz, Nathalie M Droin, Remy Jelin, Cyril Quivoron, Stéphane de Botton, Jean Donadieu, Jean‐François Emile, Elsa Bernard, Sébastien Héritier, Julien Haroche, Camille Bigenwald

    Discovered via OpenAlex

  276. Blood

    Unmasking PNH: Epidemiological and clinical insights from Qatar

    Amna Gameil, Suhair El ajez, Omnya Abdalla, Wafa Ali Mohammed, Dina Sameh Soliman, Samah Ahmed Samy Kohla, Aliaa Amer, Yahya Mulikandathil, Ibrahim Ganwo, Anas Hamad, Honar Charif, Feryal Hilmi

    Discovered via OpenAlex

  277. Blood

    Longitudinal single-cell spatial proteomics reveals predictive immune and stem cell signatures in Relapsed/Refractory AML

    Varun S. Sudunagunta, Stefan Petkov, Rongjia Deng, Yi Chen, Sebastian Fernando, Edna Stewart, Michele Simonetti, Sunil Girish Iyer, Monica Kasbekar, Daniel J. Lee, Mark G. Frattini, Simon Fredriksson, Joseph Gerard Jurcic, Todd Louis Rosenblat, Aaron D. Viny

    Discovered via OpenAlex

  278. Sensors

    Engineering Linker-Enhanced OmpG Nanopores for Rapid Single-Molecule Protease Detection

    Minji Kim, Bach Pham

    Discovered via OpenAlex

  279. International Journal of Molecular Sciences

    Protein Design Meets Single-Molecule Detection: Towards Programmable Nanopore Sensors

    Xintong Liu, Chunfu Xu

    Discovered via OpenAlex

  280. Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)

    Substrate-binding proteins as amino acid sensors inside Cytolysin A

    Teixeira, Pedro Gustavo Ferreira Curto Pedroso

    Discovered via OpenAlex

  281. EZ-DMS - A Simple and Accessible Protocol and Software Package for Deep Mutational Scanning of Virus Proteins v1

    Gillman.Aaron.N not provided, Samuel A McCarthy-Potter, Rohith Rao Vujjini, Madeline M Broghammer, Cassian M Birler, Alex B. Kleinpeter, Hillel Haim

    Discovered via OpenAlex

  282. Optimising nanopore systems to advance biosensing applications

    Edo Vreeker

    Discovered via OpenAlex